Nonlocal finite dffierence discretization of a class of renewal equation models for epidemics

In this paper we consider a non-standard discretization to a Volterra integro-dierential system which includes a number of age-of-infection models in the literature. The aim is to provide a general framework to analyze the proposed scheme for the numerical solution of a class of problems whose continuous dynamic is well known in the literature and allow a deeper analysis in cases where the theory lacks

A renewal equation approach to behavioural epidemic models: analytical and numerical issues

Epidemic models structured by the age of infection can be formulated in terms of a system of renewal equations and represent a very general mathematical framework for the analysis of infectious diseases ([1, 2]). Here, we propose a formulation of renawal equations that takes into account of the behavioral response of individuals to infection. We use the so called "information index", which is a distributed delay that summarizes the information available on current and past disease trend, and extend some results regarding compartmental behavioral models [3, 4, 5].

A long-time behavior preserving numerical scheme for age-of-infection epidemic models with heterogeneous mixing

In this manuscript we propose a numerical method for non-linear integro-differential systems arising in age-of-infection models in a heterogeneously mixed population. The discrete scheme is based on direct quadrature methods and provides an unconditionally positive and bounded solution. Furthermore, we prove the existence of the numerical final size of the epidemic and show that it tends to its continuous equivalent as the discretization steplength vanishes.

A multi-GPU aggregation-based AMG preconditioner for iterative linear solvers

We present and release in open source format a sparse linear solver which efficiently exploits heterogeneous parallel computers. The solver can be easily integrated into scientific applications that need to solve large and sparse linear systems on modern parallel computers made of hybrid nodes hosting Nvidia Graphics Processing Unit (GPU) accelerators.

The variational approach to s-fractional heat flows and the limit cases s-+0+and s-+1-

This paper deals with the limit cases for s-fractional heat flows in a cylindrical domain, with homogeneous Dirichlet boundary conditions, as s-+ 0+ and s-+ 1-. We describe the fractional heat flows as minimizing move-ments of the corresponding Gagliardo seminorms, with re-spect to the L2 metric. To this end, we first provide a Gamma-convergence analysis for the s-Gagliardo seminorms as s-+ 0+ and s-+ 1-; then, we exploit an abstract stability result for minimizing movements in Hilbert spaces, with respect to a sequence of Gamma-converging uniformly lambda-convex energy function-als.

Excluded volume effects on active ring polymers

The properties of semiflexible active ring polymers are studied by numerical simulations. The two-dimensionally confined polymer is modeled as a closed bead-spring chain subject to tangential active forces, and the interaction with the fluid is described by the Brownian multiparticle collision dynamics approach. Both phantom polymers and chains with excluded-volume interactions are considered. The size and shape strongly depend on the relative ratio of the persistence length to the ring length as well as on the active force.

Lattice Boltzmann Modeling of Cholesteric Liquid Crystal Droplets Under an Oscillatory Electric Field

We numerically study the dynamics of quasi-two dimensional cholesteric liquid crystal droplets in the presence of a time-dependent electric field, rotating at constant angular velocity. A surfactant sitting at the droplet interface is also introduced to prevent droplet coalescence. The dynamics is modeled following a hybrid numerical approach, where a standard lattice Boltzmann technique solves the Navier-Stokes equation and a finite difference scheme integrates the evolution equations of liquid crystal and surfactant.

A non-standard numerical method preserving global properties of integro-differential systems

We propose a numerical method for a general integro-differential system of equations which includes a number of age-of-infection epidemic models in the literature [1, 2]. The numerical solution is obtained by a non-standard discretization of the nonlinear terms in the system, and agrees with the analytical solution in many important qualitative aspects. Both the behaviour at finite time and the asymptotic properties of the solution are preserved for any value of the discretization parameter.

On the probability of (falsely) connecting two distinct components when learning a GGM

In this paper, we extend the result on the probability of (falsely) connecting two distinct components when learning a GGM (Gaussian Graphical Model) by the joint regression based technique. While the classical method of regression based technique learns the neighbours of each node one at a time through a Lasso penalized regression, its joint modification, considered here, learns the neighbours of each node simultaneously through a group Lasso penalized regression.

RNASeqGUI: a GUI for analysing RNA-Seq data

Summary: We present RNASeqGUI R package, a graphical user interface (GUI) for the identification of differentially expressed genes across multiple biological conditions. This R package includes some wellk-nown RNA-Seq tools, available at www.bioconductor.org. RNASeqGUI package is not just a collection of some known methods and functions, but it is designed to guide the user during the entire analysis process. RNASeqGUI package is mainly addressed to those users who have little experience with command-line software.