
An inner-point modification of PSO for constrained optimization
In the last two decades, PSO (Particle Swarm Optimization) gained a lot of attention
among the different derivative-free algorithms for global optimization. The simplicity of the
implementation, compact memory usage and parallel structure represent some key features,
largely appreciated. On the other hand, the absence of local information about the objective
function slow down the algorithm when one or more constraints are violated, even if a
penalty approach is applied.
ON THE MODULUS OF CONTINUITY OF SOLUTIONS TO THE n-LAPLACE EQUATION
Solutions to the n-Laplace equation with a right-hand side f are considered. We exhibit the largest rearrangement-invariant space to which f has to belong for every local weak solution to be continuous. Moreover, we find the optimal modulus of continuity of solutions when f ranges in classes of rearrangement-invariant spaces, including Lorentz, Lorentz-Zygmund and various standard Orlicz spaces.
Combining pathway identification and survival prediction via screening-network analysis
Motivation
Gene expression data from high-throughput assays, such as microarray, are often used to
predict cancer survival. However, available datasets consist of a small number of samples (n patients)
and a large number of gene expression data (p predictors). Therefore, the main challenge
is to cope with the high-dimensionality, i.e. p>>n, and a novel appealing approach is to use
screening procedures to reduce the size of the feature space to a moderate scale (Wu & Yin 2015,
Song et al. 2014, He et al. 2013).
Applications of network-based survival analysis methods for pathway detection in cancer
Gene expression data from high-throughput assays, such as
microarray, are often used to predict cancer survival. Available datasets
consist of a small number of samples (n patients) and a large number of
genes (p predictors). Therefore, the main challenge is to cope with the
high-dimensionality. Moreover, genes are co-regulated and their expression
levels are expected to be highly correlated. In order to face these
two issues, network based approaches can be applied.
Continuity properties of solutions to the p-Laplace system
A sharp integrability condition on the right-hand side of the p-Laplace system for all its solutions
to be continuous is exhibited. Their uniform continuity is also analyzed and estimates for their modulus
of continuity are provided. The relevant estimates are shown to be optimal as the right-hand side ranges in
classes of rearrangement-invariant spaces, such as Lebesgue, Lorentz, Lorentz-Zygmund, and Marcinkiewicz
spaces, as well as some customary Orlicz spaces.
Is this the right normalization? A diagnostic tool for ChIP-seq normalization
Background: Chip-seq experiments are becoming a standard approach for genome-wide profiling protein-DNA interactions, such as detecting transcription factor binding sites, histone modification marks and RNA Polymerase II occupancy. However, when comparing a ChIP sample versus a control sample, such as Input DNA, normalization procedures have to be applied in order to remove experimental source of biases. Despite the substantial impact that the choice of the normalization method can have on the results of a ChIP-seq data analysis, their assessment is not fully explored in the literature.





