Single-Cell RNA Sequencing Analysis: A Step-by-Step Overview

Thanks to innovative sample-preparation and sequencing technologies, gene expression in individual cells can now be measured for thousands of cells in a single experiment. Since its introduction, single-cell RNA sequencing (scRNA-seq) approaches have revolutionized the genomics field as they created unprecedented opportunities for resolving cell heterogeneity by exploring gene expression profiles at a single-cell resolution. However, the rapidly evolving field of scRNA-seq invoked the emergence of various analytics approaches aimed to maximize the full potential of this novel strategy.

Mining the Mind: Linear Discriminant Analysis of MEG Source Reconstruction Time Series Supports Dynamic Changes in Deep Brain Regions During Meditation Sessions

Meditation practices have been claimed to have a positive effect on the regulation of mood and emotions for quite some time by practitioners, and in recent times there has been a sustained effort to provide a more precise description of the influence of meditation on the human brain. Longitudinal studies have reported morphological changes in cortical thickness and volume in selected brain regions due to meditation practice, which is interpreted as an evidence its effectiveness beyond the subjective self reporting.

An in-vivo validation of ESI methods with focal sources

Electrical source imaging (ESI) aims at reconstructing the electrical brain activity from measurements of the electric field on the scalp. Even though the localization of single focal sources should be relatively straightforward, different methods provide diverse solutions due to the different underlying assumptions. Furthermore, their input parameter(s) further affects the solution provided by each method, making localization even more challenging.

Managing crowded museums: Visitors flow measurement, analysis, modeling, and optimization

We present an all-around study of the visitors flow in crowded museums: a combination of Lagrangian field measurements and statistical analyses enable us to create stochastic digital-twins of the guest dynamics, unlocking comfort- and safety-driven optimizations. Our case study is the Galleria Borghese museum in Rome (Italy), in which we performed a real-life data acquisition campaign.

Energy-preserving splitting integrators for sampling from Gaussian distributions with Hamiltonian Monte Carlo method

The diffusive behaviour of simple random-walk proposals of many Markov Chain Monte Carlo (MCMC) algorithms results in slow exploration of the state space making inefficient the convergence to a target distribution. Hamiltonian/Hybrid Monte Carlo (HMC), by introducing fictious momentum variables, adopts Hamiltonian dynamics, rather than a probability distribution, to propose future states in the Markov chain. Splitting schemes are numerical integrators for Hamiltonian problems that may advantageously replace the St¨ormer-Verlet method within HMC methodology.

Phosgene distribution derived from MIPAS ESA v8 data: intercomparisons and trends

The Michelson Interferometer for Passive Atmospheric Sounding (MIPAS) measured the middle-infrared limb emission spectrum of the atmosphere from 2002 to 2012 on board ENVISAT, a polar-orbiting satellite. Recently, the European Space Agency (ESA) completed the final reprocessing of MIPAS measurements, using version 8 of the level 1 and level 2 processors, which include more accurate models, processing strategies, and auxiliary data. The list of retrieved gases has been extended, and it now includes a number of new species with weak emission features in the MIPAS spectral range.

Metastability and Dynamics of Discrete Topological Singularities in Two Dimensions: A Gamma-Convergence Approach

This paper aims at building a variational approach to the dynamics of discrete topological singularities in two dimensions, based on I"-convergence. We consider discrete systems, described by scalar functions defined on a square lattice and governed by periodic interaction potentials. Our main motivation comes from XY spin systems, described by the phase parameter, and screw dislocations, described by the displacement function. For these systems, we introduce a discrete notion of vorticity.

Neural oscillations track natural but not artificial fast speech: Novel insights from speech-brain coupling using MEG

Neural oscillations contribute to speech parsing via cortical tracking of hierarchical linguistic structures, including syllable rate. While the properties of neural entrainment have been largely probed with speech stimuli at either normal or artificially accelerated rates, the important case of natural fast speech has been largely overlooked. Using magnetoencephalography, we found that listening to naturally-produced speech was associated with cortico-acoustic coupling, both at normal (~6 syllables/s) and fast (~9 syllables/s) rates, with a corresponding shift in peak entrainment frequency.