Circuits and systems for high-throughput biology

The importance of circuits and systems for high-throughput biological data acquisition in biomedical research are discussed. High-throughput biological data acquisition and processing technologies have shifted the focus of biological research from the the traditional experimental science to that of information science. Powerful computation and communication means can be applied to a very large amount of apparently incoherent data coming from biomedical research.

Enhanced pClustering and its applications to gene expression data

Clustering has been one of the most popular methods to discover useful biological insights from DNA microarray. An interesting paradigm is simultaneous clustering of both genes and experiments. This "biclustering "paradigm aims at discovering clusters that consist of a subset of the genes showing a coherent expression pattern over a subset of conditions. The pClustering approach is a technique that belongs to this paradigm. Despite many theoretical advantages, this technique has been rarely applied to actual gene expression data analysis.

Aberrant methylation patterns in colorectal cancer: a meta-analysis

Colorectal cancer is among the leading causes of cancer death worldwide. Despite numerous molecular characterizations of the phenomenon, the exact dynamics of its onset and progression remain elusive. Colorectal cancer onset has been characterized by changes in DNA methylation profiles, that, owing to the stability of their patterns, are promising candidates to shed light on the molecular events laying at the base of this phenomenon.

Correlation enhanced modularity-based belief propagation method for community detection in networks

Community structure is an important feature of networks, and the correct detection of communities is a fundamental problem in network analysis. Statistical inference has recently been proposed for successful detection, provided the number of communities can be appropriately estimated a priori. In the absence of such information, model selection by determination of the number of communities remains an issue. We show here that correlation between communities from a highly parceled partition can be used to estimate a narrow range of variation for the real number of communities.