A non-standard numerical method preserving global properties of integro-differential systems

We propose a numerical method for a general integro-differential system of equations which includes a number of age-of-infection epidemic models in the literature [1, 2]. The numerical solution is obtained by a non-standard discretization of the nonlinear terms in the system, and agrees with the analytical solution in many important qualitative aspects. Both the behaviour at finite time and the asymptotic properties of the solution are preserved for any value of the discretization parameter.

A multi-GPU aggregation-based AMG preconditioner for iterative linear solvers

We present and release in open source format a sparse linear solver which efficiently exploits heterogeneous parallel computers. The solver can be easily integrated into scientific applications that need to solve large and sparse linear systems on modern parallel computers made of hybrid nodes hosting Nvidia Graphics Processing Unit (GPU) accelerators.

The variational approach to s-fractional heat flows and the limit cases s-+0+and s-+1-

This paper deals with the limit cases for s-fractional heat flows in a cylindrical domain, with homogeneous Dirichlet boundary conditions, as s-+ 0+ and s-+ 1-. We describe the fractional heat flows as minimizing move-ments of the corresponding Gagliardo seminorms, with re-spect to the L2 metric. To this end, we first provide a Gamma-convergence analysis for the s-Gagliardo seminorms as s-+ 0+ and s-+ 1-; then, we exploit an abstract stability result for minimizing movements in Hilbert spaces, with respect to a sequence of Gamma-converging uniformly lambda-convex energy function-als.

A renewal equation approach to behavioural epidemic models: analytical and numerical issues

Epidemic models structured by the age of infection can be formulated in terms of a system of renewal equations and represent a very general mathematical framework for the analysis of infectious diseases ([1, 2]). Here, we propose a formulation of renawal equations that takes into account of the behavioral response of individuals to infection. We use the so called "information index", which is a distributed delay that summarizes the information available on current and past disease trend, and extend some results regarding compartmental behavioral models [3, 4, 5].

Screw dislocations in periodic media: Variational coarse graining of the discrete elastic energy

We study the asymptotic behavior, as the lattice spacing ? tends to zero, of the discrete elastic energy induced by topological singularities in an inhomogeneous ? periodic medium within a two-dimensional model for screw dislocations in the square lattice. We focus on the |log?| regime which, as ?->0 allows the emergence of a finite number of limiting topological singularities.

On the probability of (falsely) connecting two distinct components when learning a GGM

In this paper, we extend the result on the probability of (falsely) connecting two distinct components when learning a GGM (Gaussian Graphical Model) by the joint regression based technique. While the classical method of regression based technique learns the neighbours of each node one at a time through a Lasso penalized regression, its joint modification, considered here, learns the neighbours of each node simultaneously through a group Lasso penalized regression.

RNASeqGUI: a GUI for analysing RNA-Seq data

Summary: We present RNASeqGUI R package, a graphical user interface (GUI) for the identification of differentially expressed genes across multiple biological conditions. This R package includes some wellk-nown RNA-Seq tools, available at www.bioconductor.org. RNASeqGUI package is not just a collection of some known methods and functions, but it is designed to guide the user during the entire analysis process. RNASeqGUI package is mainly addressed to those users who have little experience with command-line software.