Systemic evaluation of cellular reprogramming processes exploiting a novel R-tool: eegc

Motivation: Cells derived by cellular engineering, i.e. differentiation of induced pluripotent stem cells and direct lineage reprogramming, carry a tremendous potential for medical applications and in particular for regenerative therapies. These approaches consist in the definition of lineage-specific experimental protocols that, by manipulation of a limited number of biological cues-niche mimicking factors, (in) activation of transcription factors, to name a few-enforce the final expression of cell-specific (marker) molecules.

A multi-component discrete Boltzmann model for nonequilibrium reactive flows

We propose a multi-component discrete Boltzmann model (DBM) for premixed, nonpremixed, or partially premixed nonequilibrium reactive flows. This model is suitable for both subsonic and supersonic flows with or without chemical reaction and/or external force. A two-dimensional sixteen-velocity model is constructed for the DBM. In the hydrodynamic limit, the DBM recovers the modified Navier-Stokes equations for reacting species in a force field.

Entropic lattice pseudo-potentials for multiphase flow simulations at high Weber and Reynolds numbers

We present an entropic version of the lattice Boltzmann pseudo-potential approach for the simulation of multiphase flows. The method is shown to correctly simulate the dynamics of impinging droplets on hydrophobic surfaces and head-on and grazing collisions between droplets, at Weber and Reynolds number regimes not accessible to previous pseudo-potential methods at comparable resolution.

Lower tropospheric ozone retrievals from infrared satellite observations using a self-adapting regularization method

Lower tropospheric ozone (O3) retrievals from nadir sounders is challenging due to the lack of vertical sensitivity of the measurements and towards the lowest layers. If improvements have been made during the last decade, it is still important to explore possibilities to improve the retrieval algorithms themselves. O3 retrieval from nadir satellite observations is an ill-conditioned problem, which requires regularization using constraint matrices. Up to now, most of the retrieval algorithms rely on a fixed constraint.

Copepods encounter rates from a model of escape jump behaviour in turbulence

A key ecological parameter for planktonic copepod studies is their encounter rates within the same population as well as with other species. The encounter rate is partly determined by copepod's swimming behaviour and is strongly influenced by turbulence of the surrounding environment. A distinctive feature of copepods' motility is their ability to perform quick displacements, often termed jumps, by means of powerful swimming strokes. Such a reaction has been associated to an escape behaviour from flow disturbances due to predators or other external signals.

Geometry of tracer trajectories in rotating turbulent flows

The geometry of passive tracer trajectories is studied in two different types of rotating turbulent flows; rotating Rayleigh-Bénard convection (RBC; experiments and direct numerical simulations) and rotating electromagnetically forced turbulence (EFT; experiments). This geometry is fully described by the curvature and torsion of trajectories, and from these geometrical quantities we can subtract information on the typical flow structures at different rotation rates.

OPTIMAL CONTROL OF INVASIVE SPECIES

The containment of the invasive species is a widespread problem in the environmental management, with a significant economic impact. We analyze an optimal control model which aims to find the best temporal resource allocation strategy for the removal of an invasive species. We study the existence and uniqueness of the optimal solution when both initial and final conditions on the state variable are fixed.

LBsoft: A parallel open-source software for simulation of colloidal systems

We present LBsoft, an open-source software developed mainly to simulate the hydro-dynamics of colloidal systems based on the concurrent coupling between lattice Boltzmann methods for the fluid and discrete particle dynamics for the colloids. Such coupling has been developed before, but, to the best of our knowledge, no detailed discussion of the programming issues to be faced in order to attain efficient implementation on parallel architectures, has ever been presented to date.

A coupled lattice Boltzmann-Multiparticle collision method for multi-resolution hydrodynamics

In this work we discuss the coupling of two mesoscopic approaches for fluid dynamics, namely the lattice Boltzmann method (LB) and the multiparticle collision dynamics (MPCD) [20] to design a new class of flexible and efficient multiscale schemes based on a dual representation of the fluid observables.

Distribution and trend estimation of MIPAS ESA V7 carbon tetrachloride data and preliminary results of variability of new species derived with MIPAS ESA V8 processor

MIPAS on ENVISAT performed almost continuous measurements of atmospheric composition for approximately 10 years, from June 2002 to April 2012. ESA processor, based on the algorithm ORM (Optimized Retrieval Model), originally designed for the Near Real Time analysis, is currently used for the reanalysis of the full MIPAS mission. Version 7 of the full mission data was released in 2016, but further improvements have been recently performed in ORM V8 to be used in next full mission reanalysis.