Network and Systems Medicine: Position Paper of the European Collaboration on Science and Technology Action on Open Multiscale Systems Medicine

Introduction: Network and systems medicine has rapidly evolved over the past decade, thanks to computational and integrative tools, which stem in part from systems biology. However, major challenges and hurdles are still present regarding validation and translation into clinical application and decision making for precision medicine.

Deep learning in systems medicine

Systems medicine (SM) has emerged as a powerful tool for studying the human body at the systems level with the aim of improving our understanding, prevention and treatment of complex diseases. Being able to automatically extract relevant features needed for a given task from high-dimensional, heterogeneous data, deep learning (DL) holds great promise in this endeavour. This review paper addresses the main developments of DL algorithms and a set of general topics where DL is decisive, namely, within the SM landscape.

Optimal Control of Invasive Species with Budget Constraint: Qualitative Analysis and Numerical Approximation

The containment of the invasive species is a widespread problem in the environmental management, with a significant economic impact. We analyze an optimal control model which aims to find the best temporal resource allocation strategy for the removal of an invasive species. We derive the optimality system in the state and control variables and we use the phase-space analysis to provide qualitative insights about the behavior of the optimal solution.

Designing a Network Proximity-Based Drug Repurposing Strategy for COVID-19

The ongoing COVID-19 pandemic still requires fast and effective efforts from all fronts, including epidemiology, clinical practice, molecular medicine, and pharmacology. A comprehensive molecular framework of the disease is needed to better understand its pathological mechanisms, and to design successful treatments able to slow down and stop the impressive pace of the outbreak and harsh clinical symptomatology, possibly via the use of readily available, off-the-shelf drugs.

Estimate of emissions on road networks via Generic Second Order Models

In this paper we provide emission estimates due to vehicular traffic via Generic Second Order Models. We generalize them to model road networks with merge and diverge junctions. The procedure consists on solving the Riemann Problem at junction assuming the maximization of the flow and a priority rule for the incoming roads. We provide some numerical results for a single-lane roundabout and we propose an application of the given procedure to estimate the production of nitrogen oxides (NOx) emission rates.

Towards a comprehensive model for the impact of traffic patterns on air pollution

The impact of vehicular traffic on society is huge and multifaceted, including economic, social, health and environmental aspects. The problems is complex and hard to model since it requires to consider traffic patterns, air pollutant emissions, and the chemical reactions and dynamics of pollutants in the low atmosphere. This paper aims at exploring a comprehensive simulation tool ranging from vehicular traffic all the way to environmental impact.