On the establishment of thermal diffusion in binary Lennard-Jones liquids

The establishment of thermal diffusion in an Ar-Kr Lennard-Jones mixture is investigated via dynamical non equilibrium molecular dynamics [G. Ciccotti, G. Jacucci, Phys. Rev. Lett. 35, 789 (1975)]. We observe, in particular, the evolution of the density and temperature fields of the system following the onset of the thermal gradient. In stationary conditions, we also compute the Soret coefficient of the mixture.

On metastability and Markov state models for non-stationary molecular dynamics

Unlike for systems in equilibrium, a straightforward definition of a metastable set in the non-stationary, non-equilibrium case may only be given case-by-case-and therefore it is not directly useful any more, in particular in cases where the slowest relaxation time scales are comparable to the time scales at which the external field driving the system varies. We generalize the concept of metastability by relying on the theory of coherent sets.

WELCOME TO NEUROPYPE: A PYTHON-BASED PIPELINE FOR ADVANCED MEG AND EEG CONNECTIVITY ANALYSES

With the exponential increase in data dimension and complexity, conducting state-of-the-art brain network analyses using MEG and EEG is becoming an increasingly challenging and time-consuming endeavor. Here we describe NeuroPype, a free open-source Python package we developed for efficient multi-thread processing of MEG and EEG studies. The proposed package is based on NiPype and MNE-Python and benefits from standard Python packages such as NumPy and SciPy. The pipeline also incorporates several existing wrappers, such as a Freesurfer Pyhton-wrapper for multi-subject MRI segmentation.

Pathways identification in cancer survival analysis by network-based Cox models

Gene expression data from high-throughput assays, such as microarray, are often used to predict cancer survival. However, available datasets consist of a small number of samples (n patients) and a large number of gene expression data (p predictors). Therefore, the main challenge is to cope with the high-dimensionality. Moreover, genes are co-regulated and their expression levels are expected to be highly correlated. In order to face these two issues, network based approaches have been proposed.

Wavelet estimation and variable selection for additive partial linear models

Additive partial linear models with nonparametric additive components of heterogeneous smoothness are studied. To achieve optimal rates in large sample situations we use block wavelet penalisation techniques combined with adaptive (group) LASSO procedures for selecting the variables in the linear part and the the additive components in the nonparametric part of the models. Numerical implementations of our procedures for proximal like algorithms are discussed.

Additive model selection

We study sparse high dimensional additive model fitting via penalization with sparsity-smoothness penalties. We review several existing algorithms that have been developed for this problem in the recent literature, highlighting the connections between them, and present some computationally efficient algorithms for fitting such models. Furthermore, using reasonable assumptions and exploiting recent results on group LASSO-like procedures, we take advantage of several oracle results which yield asymptotic optimality of estimators for high-dimensional but sparse additive models.

COMPARING THE NEURAL CORRELATES OF FOCUSED-ATTENTION AND OPEN-MONITORING MEDITATION: A MEG STUDY

The phenomenology and reported effects of meditation vary according to the technique practiced. While numerous studies have explored the cerebral mechanisms involved in meditation, little research provides direct comparisons between the neuronal network dynamics involved in different meditation techniques. Here, we explore and compare brain signals recorded with magnetoencephalography (MEG) during (a) focused-attention meditation (FAM), and (b) open-monitoring meditation (OMM) in a group of expert meditators (12 monks).

Jensen shannon divergence as reduced reference measure for image denoising

This paper focuses on the use the Jensen Shannon divergence for guiding denoising. In particular, it aims at detecting those image regions where noise is masked; denoising is then inhibited where it is useless from the visual point of view. To this aim a reduced reference version of the Jensen Shannon divergence is introduced and it is used for determining a denoising map. The latter separates those image pixels that require to be denoised from those that have to be leaved unaltered.

Gyroscope precession along bound equatorial plane orbits around a Kerr black hole

The precession of a test gyroscope along stable bound equatorial plane orbits around a Kerr black hole is analyzed, and the precession angular velocity of the gyro's parallel transported spin vector and the increment in the precession angle after one orbital period is evaluated. The parallel transported Marck frame which enters this discussion is shown to have an elegant geometrical explanation in terms of the electric and magnetic parts of the Killing-Yano 2-form and a Wigner rotation effect.

Linear and anomalous front propagation in systems with non-Gaussian diffusion: The importance of tails

We investigate front propagation in systems with diffusive and subdiffusive behavior. The scaling behavior of moments of the diffusive problem, both in the standard and in the anomalous cases, is not enough to determine the features of the reactive front. In fact, the shape of the bulk of the probability distribution of the transport process, which determines the diffusive properties, is important just for preasymptotic behavior of front propagation, while the precise shape of the tails of the probability distribution determines asymptotic behavior of front propagation.