Numerical simulation of conformational variability in biopolymer translocation through wide nanopores

Numerical results on the translocation of long biopolymers through mid-sized and wide pores are presented. The simulations are based on a novel methodology which couples molecular motion to a mesoscopic fluid solvent. Thousands of events of long polymers (up to 8000 monomers) are monitored as they pass through nanopores. Comparison between the different pore sizes shows that wide pores can host a larger number of multiple biopolymer segments, as compared to smaller pores.

A hydro-kinetic scheme for the dynamics of hydrogen bonds in water-like fluids

A hydro-kinetic scheme for water-like fluids, based on a lattice version of the Boltzmann equation, is presented and applied to the popular TIP3P model of liquid water. By proceeding in much larger steps than molecular dynamics, the scheme proves to be very effective in attaining global minima of classical pair potentials with directional and radial interactions, as confirmed by further simulations using the three-dimensional Ben-Naim water potential.

Experimental study on the atmospheric delay based on GPS, SAR interferometry, and numerical weather model data

In this paper, we present the results of an experiment aiming to compare measurements of atmospheric delay by synthetic aperture radar (SAR) interferometry and GPS techniques to estimates by numerical weather prediction. Maps of the differential atmospheric delay are generated by processing a set of interferometric SAR images acquired by the ENVISAT-ASAR mission over the Lisbon region from April to November 2009. GPS measurements of the wet zenith delay are carried out over the same area, covering the time interval between the first and the last SAR acquisition.

A Derivative-Free Riemannian Powell's Method, Minimizing Hartley-Entropy-Based ICA Contrast

Even though the Hartley-entropy-based contrast function guarantees an unmixing local minimum, the reported nonsmooth optimization techniques that minimize this nondifferentiable function encounter computational bottlenecks. Toward this, Powell's derivative-free optimization method has been extended to a Riemannian manifold, namely, oblique manifold, for the recovery of quasi-correlated sources by minimizing this contrast function.

Merging GPS and Atmospherically Corrected InSAR Data to Map 3-D Terrain Displacement Velocity

A method to derive accurate spatially dense maps of 3-D terrain displacement velocity is presented. It is based on the merging of terrain displacement velocities estimated by time series of interferometric synthetic aperture radar (InSAR) data acquired along ascending and descending orbits and repeated GPS measurements. The method uses selected persistent scatterers (PSs) and GPS measurements of the horizontal velocity. An important step of the proposed method is the mitigation of the impact of atmospheric phase delay in InSAR data.

On a pseudoparabolic regularization of a forward-backward-forward equation

We consider an initial-boundary value problem for a degenerate pseudoparabolic regularization of a nonlinear forward-backward-forward parabolic equation, with a bounded nonlinearity which is increasing at infinity. We prove existence of suitably defined nonnegative solutions of the problem in a space of Radon measures. Solutions satisfy several monotonicity and regularization properties; in particular, their singular part is nonincreasing and may disappear in finite time.

Modeling fluid flows in distensible tubes for applications in hemodynamics

We present a lattice Boltzmann (LB) model for the simulation of hemodynamic flows in the presence of compliant walls. The new scheme is based on the use of a continuous bounce-back boundary condition, as combined with a dynamic constitutive relation between the flow pressure at the wall and the resulting wall deformation. The method is demonstrated for the case of two-dimensional (axisymmetric) pulsatile flows, showing clear evidence of elastic wave propagation of the wall perturbation in response to the fluid pressure.