Chromatin and transcriptional response to loss of TBX1 in differentiating mouse P19Cl6 and embryonic stem cells

The T-box transcription factor TBX1 has critical roles in the cardiopharyngeal lineage and the gene is haploinsufficient in DiGeorge syndrome, a typical developmental anomaly of the pharyngeal apparatus. Despite almost two decades of research, if and how TBX1 function triggers chromatin remodeling is not known. Here, we explored genome-wide gene expression and chromatin remodeling in two independent cellular models of Tbx1 loss of function, mouse embryonic carcinoma cells P19Cl6, and mouse embryonic stem cells (mESCs).

Comparing effective-one-body Hamiltonians for spin-aligned coalescing binaries

TEOBResumS and SEOBNRv4 are the two existing semianalytical gravitational waveform models for spin-aligned coalescing black hole binaries based on the effective-one-body (EOB) approach. They are informed by numerical relativity simulations and provide the relative dynamics and waveforms from early inspiral to plunge, merger, and ringdown. The central building block of each model is the EOB resummed Hamiltonian. The two models implement different Hamiltonians that are both deformations of the Hamiltonian of a test spinning black hole moving around a Kerr black hole.

Filtered interpolation for solving Prandtl's integro-differential equations

In order to solve Prandtl--type equations we propose a collocation--quadrature method based on de la Vallée Poussin (briefly VP) filtered interpolation at Chebyshev nodes. Uniform convergence and stability are proved in a couple of Holder--Zygmund spaces of locally continuous functions. With respect to classical methods based on Lagrange interpolation at the same collocation nodes, we succeed in reproducing the optimal convergence rates of the L2 case and cut off the typical log factor which seemed inevitable dealing with uniform norms.

Soft congestion approximation to the one-dimensional constrained Euler equations

This article is concerned with the analysis of the one-dimensional compressible Euler equations with a singular pressure law, the so-called hard sphere equation of state. The result is twofold. First, we establish the existence of bounded weak solutions by means of a viscous regularization and refined compensated compactness arguments. Second, we investigate the smooth setting by providing a de- tailed description of the impact of the singular pressure on the breakdown of the solutions.

Impaired flickering of the permeability transition pore causes SPG7 spastic paraplegia

Background: Mutations of the mitochondrial protein paraplegin cause hereditary spastic paraplegia type 7 (SPG7), a so-far untreatable degenerative disease of the upper motoneuron with still undefined pathomechanism. The intermittent mitochondrial permeability transition pore (mPTP) opening, called flickering, is an essential process that operates to maintain mitochondrial homeostasis by reducing intra-matrix Ca and reactive oxygen species (ROS) concentration, and is critical for efficient synaptic function.

Spectral Analysis of Saddle-point Matrices from Optimization problems with Elliptic PDE Constraints

The main focus of this paper is the characterization and exploitation of the asymptotic spectrum of the saddle--point matrix sequences arising from the discretization of optimization problems constrained by elliptic partial differential equations. They uncover the existence of an hidden structure in these matrix sequences, namely, they show that these are indeed an example of Generalized Locally Toeplitz (GLT) sequences.

CHOP and c-JUN up-regulate the mutant Z ? 1-antitrypsin, exacerbating its aggregation and liver proteotoxicity

?1-Antitrypsin (AAT) encoded by the SERPINA1 gene is an acute-phase protein synthesized in the liver and secreted into the circulation. Its primary role is to protect lung tissue by inhibiting neutrophil elastase. The Z allele of SERPINA1 encodes a mutant AAT, named ATZ, that changes the protein structure and leads to its misfolding and polymerization, which cause endoplasmic reticulum (ER) stress and liver disease through a gain-of-function toxic mechanism.

Analysis of a model for waterborne diseases with Allee effect on bacteria

A limitation of current modeling studies in waterborne diseases (one of the leading causes of death worldwide) is that the intrinsic dynamics of the pathogens is poorly addressed, leading to incomplete, and often, inadequate understanding of the pathogen evolution and its impact on disease transmission and spread. To overcome these limitations, in this paper, we consider an ODEs model with bacterial growth inducing Allee effect. We adopt an adequate functional response to significantly express the shape of indirect transmission.