Multi-scale Simulation of T Helper Lymphocyte Differentiation

The complex differentiation process of the CD4+ T helper lymphocytes shapes the form and the range of the immune response to different antigenic challenges. Few mathematical and computational models have addressed this key phenomenon. We here present a multiscale approach in which two different levels of description, i.e. a gene regulatory network model and an agent-based simulator for cell population dynamics, are integrated into a single immune system model.

Modeling Biology Spanning Different Scales: An Open Challenge

It is coming nowadays more clear that in order to obtain a unified description of the different mechanisms governing the behavior and causality relations among the various parts of a living system, the development of comprehensive computational and mathematical models at different space and time scales is required. This is one of the most formidable challenges of modern biology characterized by the availability of huge amount of high throughput measurements.

Cloud mask via cumulative discriminant analysis applied to satellite infrared observations: Scientific basis and initial evaluation

We introduce a classification method (cumulative discriminant analysis) of the discriminant analysis type to discriminate between cloudy and clear-sky satellite observations in the thermal infrared. The tool is intended for the high-spectral-resolution infrared sounder (IRS) planned for the geostationary METEOSAT (Meteorological Satellite) Third Generation platform and uses IASI (Infrared Atmospheric Sounding Interferometer) data as a proxy.

Diurnal variation in Sahara desert sand emissivity during the dry season from IASI observations

The problem of diurnal variation in surface emissivity over the Sahara Desert during non-raining days is studied and assessed with observations from the Infrared Atmospheric Sounding Interferometer (IASI). The analysis has been performed over a Sahara Desert dune target area during July 2010. Spinning Enhanced Visible and Infrared Imager observations from the European geostationary platform Meteosat-9 (Meteorological Satellite 9) have been also used to characterize the target area.

Computational approaches for isoform detection and estimation: good and bad news

Background: The main goal of the whole transcriptome analysis is to correctly identify all expressed transcripts within a specific cell/tissue- at a particular stage and condition - to determine their structures and to measure their abundances. RNA-seq data promise to allow identification and quantification of transcriptome at unprecedented level of resolution, accuracy and low cost. Several computational methods have been proposed to achieve such purposes.

Fundamental diagrams for kinetic equations of traffic flow

In this paper we investigate the ability of some recently introduced discrete kinetic models of vehicular traffic to catch, in their large time behavior, typical features of theoretical fundamental diagrams. Specifically, we address the so-called "spatially homogeneous problem" and, in the representative case of an exploratory model, we study the qualitative properties of its solutions for a generic number of discrete microscopic states. This includes, in particular, asymptotic trends and equilibria, whence fundamental diagrams originate.