Active semiflexible polymer under shear flow

The dynamic behavior of a self-propelled semiflexible filament of length L is con- sidered under the action of a linear shear flow. The system is studied by using Brownian multi-particle collision dynamics. The system can be characterized in terms of the persistence length Lp of the chain, of the Peclet number, and of the Weissenberg number. The quantity Lp/L measures the bending rigidity of the polymer, the Peclet number Pe is the ratio of active force times L to thermal energy, and the Weissenberg number Wi characterizes the flow strength over thermal effects.

Numerical proof of shell model turbulence closure

The development of turbulence closure models, parametrizing the influence of small nonresolved scales on the dynamics of large resolved ones, is an outstanding theoretical challenge with vast applicative relevance. We present a closure, based on deep recur- rent neural networks, that quantitatively reproduces, within statistical errors, Eulerian and Lagrangian structure functions and the intermittent statistics of the energy cascade, including those of subgrid fluxes. To achieve high-order statistical accuracy, and thus a stringent statistical test, we employ shell models of turbulence.

A minimal physical model captures the shapes of crawling cells

Cell motility in higher organisms (eukaryotes) is crucial to biological functions ranging from wound healing to immune response, and also implicated in diseases such as cancer. For cells crawling on hard surfaces, significant insights into motility have been gained from experiments replicating such motion in vitro. Such experiments show that crawling uses a combination of actin treadmilling (polymerization), which pushes the front of a cell forward, and myosin-induced stress (contractility), which retracts the rear.

The mismatch-repair proteins MSH2 and MSH6 interact with the imprinting control regions through the ZFP57-KAP1 complex

Background Imprinting Control Regions (ICRs) are CpG-rich sequences acquiring differential methylation in the female and male germline and maintaining it in a parental origin-specific manner in somatic cells. Despite their expected high mutation rate due to spontaneous deamination of methylated cytosines, ICRs show conservation of CpG-richness and CpG-containing transcription factor binding sites in mammalian species.

Image Scaling by de la Vallée-Poussin Filtered Interpolation

We present a new image scaling method both for downscaling and upscaling, running with any scale factor or desired size. The resized image is achieved by sampling a bivariate polynomial which globally interpolates the data at the new scale. The method's particularities lay in both the sampling model and the interpolation polynomial we use. Rather than classical uniform grids, we consider an unusual sampling system based on Chebyshev zeros of the first kind.

The dynamics of colloidal intrusions in liquid crystals: A simulation perspective

Dispersing colloidal particles into liquid crystals provides a promising avenue to build a novel class of materials, with potential applications, among others, as photonic crystals, biosensors, metamaterials and new generation liquid crystal devices. Understanding the physics and dynamical properties of such composite materials is then of high-technological relevance; it also provides a remarkable challenge from a fundamental science point of view due to the intricacies of the hydrodynamic equations governing their dynamical evolution.

Switching hydrodynamics in liquid crystal devices: A simulation perspective

In liquid crystal devices it is important to understand the physics underlying their switching between different states, which is usually achieved by applying or removing an electric field. Flow is known to be a key determinant of the timescales and pathways of the switching kinetics. Incorporating hydrodynamic effects into theories for liquid crystal devices is therefore important; however this is also highly non-trivial, and typically requires the use of accurate numerical methods.

Spontaneous motility of passive emulsion droplets in polar active gels

We study by computer simulations the dynamics of a droplet of passive, isotropic fluid, embedded in a polar active gel. The latter represents a fluid of active force dipoles, which exert either contractile or extensile stresses on their surroundings, modelling for instance a suspension of cytoskeletal filaments and molecular motors. When the polarisation of the active gel is anchored normal to the droplet at its surface, the nematic elasticity of the active gel drives the formation of a hedgehog defect; this defect then drives an active flow which propels the droplet forward.

Active Model H: Scalar Active Matter in a Momentum-Conserving Fluid

We present a continuum theory of self-propelled particles, without alignment interactions, in a momentum-conserving solvent. To address phase separation, we introduce a dimensionless scalar concentration field ? with advective-diffusive dynamics. Activity creates a contribution ? to the deviatoric stress, where is odd under time reversal and d is the number of spatial dimensions; this causes an effective interfacial tension contribution that is negative for contractile swimmers.

Drag and lift coefficients of ellipsoidal particles under rarefied flow conditions

The capability to simulate a two-way coupled interaction between a rarefied gas and an arbitrary-shaped colloidal particle is important for many practical applications, such as aerospace engineering, lung drug delivery, and semiconductor manufacturing. By means of numerical simulations based on the direct-simulation Monte Carlo (DSMC) method, we investigate the influence of the orientation of the particle and rarefaction on the drag and lift coefficients, in the case of prolate and oblate ellipsoidal particles immersed in a uniform ambient flow.