Rheologic and dynamic behavior of sheared vesicle suspensions
The rheology and dynamics of suspensions of fluid vesicles is investigated by a combination of molecular dynamics and mesoscale hydrodynamics simulations in two dimensions. The vesicle suspension is confined between two no-slip shearing walls. The flow behavior is studied as a function of the shear rate, the volume fraction of vesicles, and the viscosity ratio between inside and outside fluids. Results are obtained for the interactions of two vesicles, the intrinsic viscosity of the suspension, and the cell-free layer near the walls.
ON THE MODULUS OF CONTINUITY OF SOLUTIONS TO THE n-LAPLACE EQUATION
Solutions to the n-Laplace equation with a right-hand side f are considered. We exhibit the largest rearrangement-invariant space to which f has to belong for every local weak solution to be continuous. Moreover, we find the optimal modulus of continuity of solutions when f ranges in classes of rearrangement-invariant spaces, including Lorentz, Lorentz-Zygmund and various standard Orlicz spaces.
ZFP57 recognizes multiple and closely spaced sequence motif variants to maintain repressive epigenetic marks in mouse embryonic stem cells.
Imprinting Control Regions (ICRs) need to maintain their parental allele-specific DNA methylation during early embryogenesis despite genome-wide demethylation and subsequent de novo methylation. ZFP57 and KAP1 are both required for maintaining the repressive DNA methylation and H3-lysine-9-trimethylation (H3K9me3) at ICRs. In vitro, ZFP57 binds a specific hexanucleotide motif that is enriched at its genomic binding sites.
Is this the right normalization? A diagnostic tool for ChIP-seq normalization
Background: Chip-seq experiments are becoming a standard approach for genome-wide profiling protein-DNA interactions, such as detecting transcription factor binding sites, histone modification marks and RNA Polymerase II occupancy. However, when comparing a ChIP sample versus a control sample, such as Input DNA, normalization procedures have to be applied in order to remove experimental source of biases. Despite the substantial impact that the choice of the normalization method can have on the results of a ChIP-seq data analysis, their assessment is not fully explored in the literature.
Continuity properties of solutions to the p-Laplace system
A sharp integrability condition on the right-hand side of the p-Laplace system for all its solutions
to be continuous is exhibited. Their uniform continuity is also analyzed and estimates for their modulus
of continuity are provided. The relevant estimates are shown to be optimal as the right-hand side ranges in
classes of rearrangement-invariant spaces, such as Lebesgue, Lorentz, Lorentz-Zygmund, and Marcinkiewicz
spaces, as well as some customary Orlicz spaces.
Short interspersed DNA elements and miRNAs: a novel hidden gene regulation layer in zebrafish?
In this study, we investigated by in silico analysis the possible correlation between microRNAs (miRNAs) and Anamnia V-SINEs (a superfamily of short interspersed nuclear elements), which belong to those retroposon families that have been preserved in vertebrate genomes for millions of years and are actively transcribed because they are embedded in the 3? untranslated region (UTR) of several genes. We report the results of the analysis of the genomic distribution of these mobile elements in zebrafish (Danio rerio) and discuss their involvement in generating miRNA gene loci.
Rheological properties of sheared vesicle and cell suspensions
Numerical simulations of vesicle suspensions are performed in two dimensions to study their dynamical and rheological properties.
An hybrid method is adopted, which combines a mesoscopic approach for the solvent with a curvature-elasticity model for the
membrane. Shear flow is induced by two counter-sliding parallel walls, which generate a linear flow profile. The flow behavior
is studied for various vesicle concentrations and viscosity ratios between the internal and the external fluid.
Two-dimensional performance of MIPAS observation modes in the upper-troposphere/lower-stratosphere
In this paper we analyze the performance of the three MIPAS (Michelson Interferometer for Passive Atmospheric Sounding) observation modes that sound the Upper-Troposphere/Lower-Stratosphere (UT/LS) region. The two-dimensional (2-D) tomographic retrieval approach is assumed to derive the atmospheric field of geophysical parameters. For each observation mode we have calculated the 2-D distribution of the information load quantifier relative to the main MIPAS targets.