Articoli

Anno: 2023
A computational model of the effects of macronutrients absorption and physical exercise on hormonal regulation and metabolic homeostasis Articolo in rivista
A resting state EEG study on depressed persons with suicidal ideation Articolo in rivista

Anno: 2022
Explainable Drug Repurposing Approach From Biased Random Walks Articolo in rivista

Anno: 2021
Identification and validation of viral antigens sharing sequence and structural homology with tumor-associated antigens (TAAs) Articolo in rivista
In silico designing of vaccine candidate against Clostridium difficile Articolo in rivista
From Infection to Immunity: Understanding the Response to SARS-CoV2 Through In-Silico Modeling Articolo in rivista
Immunoinformatics based designing a multi-epitope vaccine against pathogenic Chandipura vesiculovirus Articolo in rivista
Emulating complex simulations by machine learning methods Articolo in rivista
Deep learning in systems medicine Articolo in rivista

Anno: 2020
Potential predictors of type-2 diabetes risk: machine learning, synthetic data and wearable health devices Articolo in rivista
A candidate multi-epitope vaccine against SARS-CoV-2 Articolo in rivista
Deep learning in systems medicine Articolo in rivista
An Early Stage Researcher's Primer on Systems Medicine Terminology Articolo in rivista
Mechanistic Modeling and Multiscale Applications for Precision Medicine: Theory and Practice Articolo in rivista

Anno: 2019
Game of neutrophils: modeling the balance between apoptosis and necrosis Articolo in rivista
Modeling the Effect of High Calorie Diet on the Interplay between Adipose Tissue, Inflammation, and Diabetes Articolo in rivista

Anno: 2018
Personalizing physical exercise in a computational model of fuel homeostasis Articolo in rivista
Gene Regulatory Network Modeling of Macrophage Differentiation Corroborates the Continuum Hypothesis of Polarization States Articolo in rivista

Anno: 2017
Computational modeling of immune system of the fish for a more effective vaccination in aquaculture Articolo in rivista
Community effort endorsing multiscale modelling, multiscale data science and multiscale computing for systems medicine Articolo in rivista
Modeling Immune Response to Leishmania Species Indicates Adenosine As an Important Inhibitor of Th-Cell Activation Articolo in rivista
Human monocyte-derived dendritic cells exposed to hyperthermia show a distinct gene expression profile and selective upregulation of IGFBP6 Articolo in rivista
A system model of the effects of exercise on plasma Interleukin-6 dynamics in healthy individuals: Role of skeletal muscle and adipose tissue Articolo in rivista

Anno: 2016
Statistical ensemble of gene regulatory networks of macrophage differentiation Articolo in rivista
Metabolic disorders: How can systems modelling help? Articolo in rivista
Ultrasensitive HCV RNA Quantification in Antiviral Triple Therapy: New Insight on Viral Clearance Dynamics and Treatment Outcome Predictors. Articolo in rivista
The emerging role of ECM crosslinking in T cell mobility as a hallmark of immunosenescence in humans Articolo in rivista

Anno: 2015
Multiscale modelling in immunology: a review Articolo in rivista
The clinical significance of HCV core antigen detection during Telaprevir/Peg-Interferon/Ribavir in therapy in patients with HCV 1 genotype infection Articolo in rivista
The hierarchical organization of natural protein interaction networks confers self-organization properties on pseudocells. Articolo in rivista

Anno: 2014
Integrated Network Analysis Identifies Fight-Club Nodes as a Class of Hubs Encompassing Key Putative Switch Genes That Induce Major Transcriptome Reprogramming during Grapevine Development Articolo in rivista
Multi-scale Simulation of T Helper Lymphocyte Differentiation Articolo in rivista
Modeling Biology Spanning Different Scales: An Open Challenge Articolo in rivista
A mathematical model of skeletal muscle disease and immune response in the mdx mouse Articolo in rivista

Anno: 2013
The onset of type 2 diabetes: proposal for a multi-scale model Articolo in rivista
Identifying Correlations between Chromosomal Proximity of Genes and Distance of Their Products in Protein-Protein Interaction Networks of Yeast Articolo in rivista
VaccImm: Simulating peptide vaccination in cancer therapy Articolo in rivista
Physio-environmental sensing and live modeling Articolo in rivista

Anno: 2012
Mathematical and computational models in tumor immunology Articolo in rivista
A modeling framework for immune-related diseases Articolo in rivista
HIV reservoirs and immune surveillance evasion cause the failure of structured treatment interruptions: A computational study Articolo in rivista
How the interval between prime and boost injection affects the immune response in a computational model of the immune system Articolo in rivista
Time-course analysis of main markers of primary infection in cats with the feline immunodeficiency virus Articolo in rivista
Characterizing protein shape by a volume distribution asymmetry index Articolo in rivista

Anno: 2011
CTLs' repertoire shaping in the thymus: A Monte Carlo simulation Articolo in rivista
Immunological network signatures of cancer progression and survival Articolo in rivista
Immunological network signatures of cancer progression and survival Articolo in rivista
Earlier is better: a timely HAART initiation may pave the way for best controllers Articolo in rivista
Immune System Simulation Online Articolo in rivista
Development of Immune-Specific Interaction Potentials and Their Application in the Multi-Agent-System VaccImm Articolo in rivista

Anno: 2010
Criticality of timing for anti-HIV therapy initiation Articolo in rivista
Transconjunctival suture- less 25-gauge versus 20-gauge standard vitrectomy: correlation between corneal topography and ultrasound biomicroscopy measurements of sclerotomy sites Articolo in rivista
Vaccine protocols optimization: in silico experiences Articolo in rivista
Computational Immunology Meets Bioinformatics: The Use of Prediction Tools for Molecular Binding in the Simulation of the Immune System Articolo in rivista
Computational immunology meets bioinformatics: the use of prediction tools for molecular binding in the simulation of the immune system Articolo in rivista
Combining network modeling and gene expression microarray analysis to explore the dynamics of Th1 and Th2 cell regulation Articolo in rivista

Anno: 2009
Stability and phase transitions in a mathematical model of Duchenne muscular dystrophy Articolo in rivista
ImmunoGrid, an integrative environment for large-scale simulation of the immune system for vaccine discovery, design, and optimization Articolo in rivista
Immune control of HIV-1 infection after therapy interruption: immediate versus deferred antiretroviral therapy Articolo in rivista
A model of ischemia-induced neuroblast activation in the adult subventricular zone Articolo in rivista
Modeling lymphocytes homing and encounters in lymph nodes Articolo in rivista

Anno: 2008
Plasma HIV RNA decline and drug resistance evolution among patients with multiple virologic failures receiving resistance testing-guided HAART Articolo in rivista
Evaluation of HIV-1 and CD4+ T cell dynamic parameters in patients treated with genotypic resistance testing-guided HAART Articolo in rivista
Implementation of a regulatory gene network to simulate the TH1/2 differentiation in an agent-based model of hyper-sensitivity reactions Articolo in rivista
Evaluation of HIV / CD4+ T cell dynamic parameters in patients treated with genotypic resistance testing-guided HAART Articolo in rivista
A one-mutation mathematical model can explain the age incidence of AML with mutated nucleophosmin (NPM1) Articolo in rivista
A comment to Optimization and parallelisation strategies for Monte Carlo simulation of HIV infection by D. Hecqueta , H.J. Ruskinb , M. Crane. Articolo in rivista

Anno: 2007
Protnet: a stochastic tool for dynamic simulation of protein interaction networks Articolo in rivista
Microscopic simulation in biology and medicine Articolo in rivista
Cancer immunotherapy, mathematical modeling and optimal control Articolo in rivista
Determination of the optimal therapeutic protocol in cancer immunotherapy Articolo in rivista
Optimization of HAART with genetic algorithms and agent based models of HIV infection Articolo in rivista
Simulating Epstein Barr Virus Infection with C-ImmSim Articolo in rivista

Anno: 2006
An Enhanced Agent Based Model of the Immune System Respons Articolo in rivista
Optimal Control in a Model of Dendritic Cell Transfection Cancer Immunotherapy Articolo in rivista
Optimal vaccine scheduling in cancer immunotherapy Articolo in rivista
OpenMP parallelization of agent-based models Articolo in rivista

Anno: 2005
Computational modeling of the immune response to tumor antigens: implications for vaccination Articolo in rivista
Computational features of agent-based models Articolo in rivista
Modelling vaccination schedules for a cancer immunoprevention vaccine Articolo in rivista
Modeling and Simulation of Cancer Immunoprevention Vaccine Articolo in rivista
The role of computational models in designing vaccination strategies Articolo in rivista
Simulating the G-protein cAMP pathway with a two-compartment reactive lattice gas Articolo in rivista
HIV-1 strategies of immune evasion Articolo in rivista
OpenMP parallelization of agent-based models Articolo in rivista

Anno: 2004
Mutation, fitness, viral diversity and predictive markers of disease progression in a computational model of HIV-1 infection Articolo in rivista
Keratoconus Staging: A Computer-Assisted Ultrabiomicroscopic Method Compared With Videokeratographic Analysis Articolo in rivista

Anno: 2002
Selection of escape mutants from immune recognition during HIV infection Articolo in rivista
Intracellular signal propagation in a two-dimensional auto-catalytic reaction model Articolo in rivista

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