Articoli

Anno: 2023
The aberrant epigenome of DNMT3B-mutated ICF1 patient iPSCs is amenable to correction, with the exception of a subset of regions with H3K4me3- and/or CTCF-based epigenetic memory Articolo in rivista
ICF1-Syndrome-Associated DNMT3B Mutations Prevent De Novo Methylation at a Subset of Imprinted Loci during iPSC Reprogramming Articolo in rivista
Co-Occurrence of Beckwith-Wiedemann Syndrome and Early-Onset Colorectal Cancer Articolo in rivista

Anno: 2022
Jewel 2.0: An Improved Joint Estimation Method for Multiple Gaussian Graphical Models Articolo in rivista
Sulfavant A as the first synthetic TREM2 ligand discloses a homeostatic response of dendritic cells after receptor engagement Articolo in rivista
ADViSELipidomics: a workflow for analyzing lipidomics data Articolo in rivista
A Stk4 -Foxp3-p65 transcriptional complex promotes Treg cell activation and homeostasis. Articolo in rivista
The mismatch-repair proteins MSH2 and MSH6 interact with the imprinting control regions through the ZFP57-KAP1 complex Articolo in rivista
Multi-omics data integration provides insights into the post-harvest biology of a long shelf-life tomato landrace Articolo in rivista

Anno: 2021
ZBTB2 protein is a new partner of the Nucleosome Remodeling and Deacetylase (NuRD) complex Articolo in rivista
GeenaR: A Web Tool for Reproducible MALDI-TOF Analysis Articolo in rivista
Jewel: A novel method for joint estimation of gaussian graphical models Articolo in rivista
Zfp57 inactivation illustrates the role of ICR methylation in imprinted gene expression during neural differentiation of mouse ESCs Articolo in rivista
Easyreporting simplifies the implementation of Reproducible Research layers in R software Articolo in rivista
Single cell multi-omic analysis identifies a Tbx1-dependent multilineage primed population in murine cardiopharyngeal mesoderm. Articolo in rivista
COSMONET: An R Package for Survival Analysis Using Screening-Network Methods Articolo in rivista

Anno: 2020
Chromatin and transcriptional response to loss of TBX1 in differentiating mouse P19Cl6 and embryonic stem cells Articolo in rivista
Exploring the Interaction between the SWI/SNF Chromatin Remodeling Complex and the Zinc Finger Factor CTCF Articolo in rivista
StructuRly: A novel shiny app to produce comprehensive, detailed and interactive plots for population genetic analysis Articolo in rivista

Anno: 2019
Interactome mapping defines BRG1, a component of the SWI/SNF chromatin remodeling complex, as a new partner of the transcriptional regulator CTCF Articolo in rivista
High biodiversity arises from the analyses of morphometric, biochemical and genetic data in ancient olive trees of South of Italy Articolo in rivista
Transcription alterations of KCNQ1 associated with imprinted methylation defects in the Beckwith-Wiedemann locus Articolo in rivista
HiCeekR: A Novel Shiny App for Hi-C Data Analysis Articolo in rivista
Benchmark and parameter sensitivity analysis of scRNAseq clustering methods. Articolo in rivista
The phenotypic variations of multi-locus imprinting disturbances associated with maternal-effect variants of NLRP5 range from overt imprinting disorder to apparently healthy phenotype Articolo in rivista

Anno: 2018
Combining pathway identification and breast cancer survival prediction via screening-network methods Articolo in rivista

Anno: 2017
ICF-specific DNMT3B dysfunction interferes with intragenic regulation of mRNA transcription and alternative splicing. Articolo in rivista
Distinct Antigen Delivery Systems Induce Dendritic Cells' Divergent Transcriptional Response: New Insights from a Comparative and Reproducible Computational Analysis. Articolo in rivista

Anno: 2016
Cancer Markers Selection Using Network-Based Cox Regression: A Methodological and Computational Practice Articolo in rivista
On the genome base composition of teleosts: the effect of environment and lifestyle Articolo in rivista
A macroscopic mathematical model for cell migration assays using a real-time cell analysis Articolo in rivista
An atlas of gene expression and gene co-regulation in the human retina Articolo in rivista
Overproduction of indole-3-acetic acid in free-living rhizobia induces transcriptional changes resembling those occurring in nodule bacteroids. Articolo in rivista
Advancements in RNASeqGUI towards a Reproducible Analysis of RNA-Seq Experiments Articolo in rivista
Advantages and limits in the adoption of reproducible research and R-tools for the analysis of omic data Articolo in rivista

Anno: 2015
Short interspersed DNA elements and miRNAs: a novel hidden gene regulation layer in zebrafish? Articolo in rivista
Is this the right normalization? A diagnostic tool for ChIP-seq normalization Articolo in rivista
Applications of network-based survival analysis methods for pathway detection in cancer Articolo in rivista
ZFP57 recognizes multiple and closely spaced sequence motif variants to maintain repressive epigenetic marks in mouse embryonic stem cells. Articolo in rivista

Anno: 2014
RNASeqGUI: a GUI for analysing RNA-Seq data Articolo in rivista
Computational approaches for isoform detection and estimation: good and bad news Articolo in rivista
AnaLysis of Expression on human chromosome 21, ALE-HSA21: a pilot integrated web resource Articolo in rivista
Understanding gene regulatory mechanisms by integrating ChIP-seq and RNA-seq data: statistical solutions to biological problems. Articolo in rivista

Anno: 2013
L-Proline Induces a Mesenchymal-like Invasive Program in Embryonic Stem Cells by Remodeling H3K9 and H3K36 Methylation Articolo in rivista

Anno: 2012
Statistical Approaches to Use a Model Organism for Regulatory Sequences Annotation of Newly Sequenced Species Articolo in rivista
Clustering Time-Course Microarray Data Using Functional Bayesian Infinite Mixture Model Articolo in rivista
The footprint of metabolism in the organization of mammalian genomes Articolo in rivista
Bayesian models for the analysis of multisample time-course micro-array experiments Articolo in rivista

Anno: 2011
Massive-scale RNA-Seq analysis of non ribosomal transcriptome in human trisomy 21 Articolo in rivista
Beyond classical consensus clustering: the Least Squares approach to multiple solutions Articolo in rivista
The rhizosphere competent entomopathogen Metarhizium anisopliae expresses a specific subset of genes in plant root exudate Articolo in rivista

Anno: 2010
Analyzing the Whole Transcriptome by RNA-Seq Data: The Tip of the Iceberg Articolo in rivista
Combining Replicates and Nearby Species Data: A Bayesian Approach Articolo in rivista
Multiple Clustering Solutions Analysis Through Lest-Square Consensus Algorithms Articolo in rivista
Multiple clustering solutions analysis through least-squares consensus algorithms Articolo in rivista
Impairment of circulating endothelial progenitors in Down syndrome Articolo in rivista
Uncovering the complexity of transcriptomes with RNA-Seq Articolo in rivista

Anno: 2009
Bayesian models for the two-sample time-course microarray experiments Articolo in rivista
Bayesian models for the two-sample time-course microarray experiments Articolo in rivista

Anno: 2008
BATS: A Bayesian user friendly Software for analyzing time series microarray experiments. Articolo in rivista
Time-course whole-genome microarray analysis of estrogen effects on hormone-responsive breast cancer cells Articolo in rivista
BATS: a Bayesian user-friendly software for Analyzing Time Series microarray experiments Articolo in rivista

Anno: 2007
Pointwise optimality of Bayesian wavelet estimators Articolo in rivista
Analysis of the HBLA-B27 extended haplotype in Sardinia disclosed additional predisposing factors for Ankylosing Spondylitis. Articolo in rivista
Identify regulatory sites using neighbourhood species, Articolo in rivista
A Bayesian approach to estimation and testing in time-course microarray experiments Articolo in rivista

Anno: 2006
Bayesian MAP multiple testing procedures Articolo in rivista
Testing in Mixed-effects FANOVA Model Articolo in rivista

Anno: 2005
Resampling hierarchical processes in the wavelet domain: A case study using atmospheric turbulence Articolo in rivista

Anno: 2004
Empirical Bayes approach to wavelet regression using $\epsilon$-contaminated priors Articolo in rivista
Gamma-Minimax Wavelet Shrinkage: A Robust Incorporation of Information about Energy of a Signal in Denoising Applications Articolo in rivista
Empirical Bayes approach to wavelet regression using epsilon-contaminated priors Articolo in rivista
On optimality of Bayesian wavelet estimators Articolo in rivista

Anno: 2003
Wavelet Regression Estimation in Nonparametric Mixed Effect Models Articolo in rivista
Are the Effects of Large Scale Flow Conditions Really Lost Through the Turbulent Cascade? Articolo in rivista

Anno: 2000
Compression of AVHRR images by wavelet packets Articolo in rivista

Anno: 1997
Wavelet Compression of AVHRR imagery Articolo in rivista