MUPHY: A parallel MUlti PHYsics/scale code for high performance bio-fluidic simulations

We present a parallel version of MUPHY, a multi-physics/scale code based upon the combination of microscopic Molecular Dynamics (MD) with a hydro-kinetic Lattice Boltzmann (LB) method. The features of the parallel version of MUPHY are hereby demonstrated for the case of translocation of biopolymers through nanometer-sized, multi-pore configurations, taking into explicit account the hydrodynamic interactions of the translocating molecules with the surrounding fluid.

Heavy particle concentration in turbulence at dissipative and inertial scales

Spatial distributions of heavy particles suspended in an incompressible isotropic and homogeneous turbulent flow are investigated by means of high resolution direct numerical simulations. In the dissipative range, it is shown that particles form fractal clusters with properties independent of the Reynolds number. Clustering is there optimal when the particle response time is of the order of the Kolmogorov time scale tau(eta). In the inertial range, the particle distribution is no longer scale invariant.

Quantifying turbulence-induced segregation of inertial particles

Particles with different density from the advecting turbulent fluids cluster due to the different response of light and heavy particles to turbulent fluctuations. This study focuses on the quantitative characterization of the segregation of dilute polydisperse inertial particles evolving in turbulent flow, as obtained from direct numerical simulation of homogeneous isotropic turbulence. We introduce an indicator of segregation amongst particles of different inertia and/or size, from which a length scale r(seg), quantifying the segregation degree between two particle types, is deduced.

Dynamics and statistics of heavy particles in turbulent flows

We present the results of direct numerical simulations (DNS) of turbulent flows seeded with millions of passive inertial particles. The maximum Reynolds number is Re-lambda similar to 200. We consider particles much heavier than the carrier flow in the limit when the Stokes drag force dominates their dynamical evolution. We discuss both the transient and the stationary regimes. In the transient regime, we study the growth of inhomogeneities in the particle spatial distribution driven by the preferential concentration out of intense vortex filaments.