On the approximation by product rules of weakly singular double integrals over the square

Double integrals with algebraic and/or logarithmic singularities are of interest in the application of boundary element method, e.g. linear theory of the aerodynamics of slender bodies of revolution and in many other fields, for example computational electromagnetics. Therefore, the numerical evaluation of such type of integrals deserves attention.

Rheologic and dynamic behavior of sheared vesicle suspensions

The rheology and dynamics of suspensions of fluid vesicles is investigated by a combination of molecular dynamics and mesoscale hydrodynamics simulations in two dimensions. The vesicle suspension is confined between two no-slip shearing walls. The flow behavior is studied as a function of the shear rate, the volume fraction of vesicles, and the viscosity ratio between inside and outside fluids. Results are obtained for the interactions of two vesicles, the intrinsic viscosity of the suspension, and the cell-free layer near the walls.

Applications of network-based survival analysis methods for pathway detection in cancer

Gene expression data from high-throughput assays, such as microarray, are often used to predict cancer survival. Available datasets consist of a small number of samples (n patients) and a large number of genes (p predictors). Therefore, the main challenge is to cope with the high-dimensionality. Moreover, genes are co-regulated and their expression levels are expected to be highly correlated. In order to face these two issues, network based approaches can be applied.

An empirical study on optic disc segmentation using an active contour model

The accurate segmentation of the optic disc (OD) offers an important cue to extract other retinal features in an automated diagnostic system, which in turn will assist ophthalmologists to track many retinopathy conditions such as glaucoma. Research contributions regarding the OD segmentation is on the rise, since the design of a robust automated system would help prevent blindness, for instance, by diagnosing glaucoma at an early stage and a condition known as ocular hypertension.

Combining pathway identification and survival prediction via screening-network analysis

Motivation Gene expression data from high-throughput assays, such as microarray, are often used to predict cancer survival. However, available datasets consist of a small number of samples (n patients) and a large number of gene expression data (p predictors). Therefore, the main challenge is to cope with the high-dimensionality, i.e. p>>n, and a novel appealing approach is to use screening procedures to reduce the size of the feature space to a moderate scale (Wu & Yin 2015, Song et al. 2014, He et al. 2013).

ZFP57 recognizes multiple and closely spaced sequence motif variants to maintain repressive epigenetic marks in mouse embryonic stem cells.

Imprinting Control Regions (ICRs) need to maintain their parental allele-specific DNA methylation during early embryogenesis despite genome-wide demethylation and subsequent de novo methylation. ZFP57 and KAP1 are both required for maintaining the repressive DNA methylation and H3-lysine-9-trimethylation (H3K9me3) at ICRs. In vitro, ZFP57 binds a specific hexanucleotide motif that is enriched at its genomic binding sites.

New Results on Rational Approximation

First asymptotic relations of Voronovskaya-type for rational operators of Shepard-type are shown. A positive answer in some senses to a problem on the pointwise approximation power of linear operators on equidistant nodes posed by Gavrea, Gonska and Kacs is given. Direct and converse results, computational aspects and Gruss-type inequalities are also proved. Finally an application to images compression is discussed, showing the outperformance of such operators in some senses.

Rheological properties of sheared vesicle and cell suspensions

Numerical simulations of vesicle suspensions are performed in two dimensions to study their dynamical and rheological properties. An hybrid method is adopted, which combines a mesoscopic approach for the solvent with a curvature-elasticity model for the membrane. Shear flow is induced by two counter-sliding parallel walls, which generate a linear flow profile. The flow behavior is studied for various vesicle concentrations and viscosity ratios between the internal and the external fluid.