Enhanced modularity-based community detection by random walk network preprocessing

The representation of real systems with network models is becoming increasingly common and critical to both capture and simplify systems' complexity, notably, via the partitioning of networks into communities. In this respect, the definition of modularity, a common and broadly used quality measure for networks partitioning, has induced a surge of efficient modularity-based community detection algorithms. However, recently, the optimization of modularity has been found to show a resolution limit, which reduces its effectiveness and range of applications.

A comprehensive molecular interaction map for rheumatoid arthritis

Background: Computational biology contributes to a variety of areas related to life sciences and, due to the growing impact of translational medicine - the scientific approach to medicine in tight relation with basic science, it is becoming an important player in clinical-related areas. In this study, we use computation methods in order to improve our understanding of the complex interactions that occur between molecules related to Rheumatoid Arthritis (RA).

Identification of noninvasive imaging surrogates for brain tumor gene-expression modules

Glioblastoma multiforme (GBM) is,the most common and lethal primary brain tumor in adults. We combined neuroimaging and DNA microarray analysis to create a multidimensional map of gene-expression patterns in GBM that provided clinically relevant insights into tumor biology. Tumor contrast enhancement and mass effect predicted activation of specific hypoxia and proliferation gene-expression programs, respectively.

PRISMA L1 and L2 Performances within the PRISCAV Project: The Pignola Test Site in Southern Italy

In March 2019, the PRISMA (PRecursore IperSpettrale della Missione Applicativa) hyper-spectral satellite was launched by the Italian Space Agency (ASI), and it is currently operational on a global basis. The mission includes the hyperspectral imager PRISMA working in the 400-2500 nm spectral range with 237 bands and a panchromatic (PAN) camera (400-750 nm). This paper presents an evaluation of the PRISMA top-of-atmosphere (TOA) L1 products using different in situ measurements acquired over a fragmented rural area in Southern Italy (Pignola) between October 2019 and July 2021.

Enhanced pClustering and its applications to gene expression data

Clustering has been one of the most popular methods to discover useful biological insights from DNA microarray. An interesting paradigm is simultaneous clustering of both genes and experiments. This "biclustering "paradigm aims at discovering clusters that consist of a subset of the genes showing a coherent expression pattern over a subset of conditions. The pClustering approach is a technique that belongs to this paradigm. Despite many theoretical advantages, this technique has been rarely applied to actual gene expression data analysis.