Effectively dealing with invasive species is a pervasive problem in environmental management. The damages, and associated costs, that stem from invasive species are well known, as is the benefit from their removal. We investigate problems where optimal control theory has been implemented, and we show that these problems can easily become hypersensitive, making their numerical solutions unstable. We show that transforming these problems from state-adjoint systems to state-control systems can provide useful insights into the system dynamics and simplify the numerics.

Motivation: Cells derived by cellular engineering, i.e. differentiation of induced pluripotent stem cells and direct lineage reprogramming, carry a tremendous potential for medical applications and in particular for regenerative therapies. These approaches consist in the definition of lineage-specific experimental protocols that, by manipulation of a limited number of biological cues-niche mimicking factors, (in) activation of transcription factors, to name a few-enforce the final expression of cell-specific (marker) molecules.

Changes in blood epigenetic age have been associated with several pathological conditions and have recently been described to anticipate cancer development. In this work, we analyze a publicly available leukocytes methylation dataset to evaluate the relation between DNA methylation age and the prospective development of specific types of cancer.

We present an entropic version of the lattice Boltzmann pseudo-potential approach for the simulation of multiphase flows. The method is shown to correctly simulate the dynamics of impinging droplets on hydrophobic surfaces and head-on and grazing collisions between droplets, at Weber and Reynolds number regimes not accessible to previous pseudo-potential methods at comparable resolution.

Despite a long record of intense effort, the basic mechanisms by which dissipation emerges from the microscopic dynamics of a relativistic fluid still elude complete understanding. In particular, several details must still be finalized in the pathway from kinetic theory to hydrodynamics mainly in the derivation of the values of the transport coefficients. In this paper, we approach the problem by matching data from lattice-kinetic simulations with analytical predictions.

A key ecological parameter for planktonic copepod studies is their encounter rates within the same population as well as with other species. The encounter rate is partly determined by copepod's swimming behaviour and is strongly influenced by turbulence of the surrounding environment. A distinctive feature of copepods' motility is their ability to perform quick displacements, often termed jumps, by means of powerful swimming strokes. Such a reaction has been associated to an escape behaviour from flow disturbances due to predators or other external signals.

Lower tropospheric ozone (O3) retrievals from nadir sounders is challenging due to the lack of vertical sensitivity of the measurements and towards the lowest layers. If improvements have been made during the last decade, it is still important to explore possibilities to improve the retrieval algorithms themselves. O3 retrieval from nadir satellite observations is an ill-conditioned problem, which requires regularization using constraint matrices. Up to now, most of the retrieval algorithms rely on a fixed constraint.

We present LBsoft, an open-source software developed mainly to simulate the hydro-dynamics of colloidal systems based on the concurrent coupling between lattice Boltzmann methods for the fluid and discrete particle dynamics for the colloids. Such coupling has been developed before, but, to the best of our knowledge, no detailed discussion of the programming issues to be faced in order to attain efficient implementation on parallel architectures, has ever been presented to date.

Aiming to study the bubble cavitation problem in quiescent and sheared liquids, a third-order isothermal lattice Boltzmann model that describes a two-dimensional (2D) fluid obeying the van der Waals equation of state, is introduced. The evolution equations for the distribution functions in this off-lattice model with 16 velocities are solved using the corner-transport-upwind (CTU) numerical scheme on large square lattices (up to 6144 x 6144 nodes).

The threat, impact and management problems associated with alien plant invasions are increasingly becoming a major issue in environmental conservation. Invasive species cause significant damages, and high associated costs. Controlling them cost-effectively is an ongoing challenge, and mathematical models and optimizations are becoming increasingly popular as a tool to assist managers. The aim of this study is to develop a modelling approach for the optimal spatiotemporal control of invasive species in natural protected areas of high conservation value.