Network Proximity-Based Drug Repurposing Strategy for Early and Late Stages of Primary Biliary Cholangitis

Primary biliary cholangitis (PBC) is a chronic, cholestatic, immune-mediated, and progressive liver disorder. Treatment to preventing the disease from advancing into later and irreversible stages is still an unmet clinical need. Accordingly, we set up a drug repurposing framework to find potential therapeutic agents targeting relevant pathways derived from an expanded pool of genes involved in different stages of PBC.

DropTrack - Automatic droplet tracking with YOLOv5 and DeepSORT for microfluidic applications

Deep neural networks are rapidly emerging as data analysis tools, often outperforming the conventional techniques used in complex microfluidic systems. One fundamental analysis frequently desired in microfluidic experiments is counting and tracking the droplets. Specifically, droplet tracking in dense emulsions is challenging due to inherently small droplets moving in tightly packed configurations. Sometimes, the individual droplets in these dense clusters are hard to resolve, even for a human observer.

Some properties of the asymptotic location of poles of Padè approximants to noisy rational functions, relevant for modal analysis

In this paper, the modal analysis model, made up by a linear combination of complex exponential functions, is considered. Padè approximants to the Z-transform of a noisy sample are then considered, and the asymptotic locus of their poles is studied. It turns out that this locus is strongly related to the complex exponentials of the model. By exploiting these properties, powerful methods for estimating the model parameters can be devised, which have both denoising and super-resolution capabilities.

Network, degeneracy and bow tie integrating paradigms and architectures to grasp the complexity of the immune system

Recently, the network paradigm, an application of graph theory to biology, has proven to be a powerful approach to gaining insights into biological complexity, and has catalyzed the advancement of systems biology. In this perspective and focusing on the immune system, we propose here a more comprehensive view to go beyond the concept of network.

Characterization of the Shells in Layer-By-Layer Nanofunctionalized Particles: A Computational Study

Drug delivery carriers are considered an encouraging approach for the localized treatment of disease with minimum effect on the surrounding tissue. Particularly, layer-by-layer releasing particles have gained increasing interest for their ability to develop multifunctional systems able to control the release of one or more therapeutical drugs and biomolecules. Although experimental methods can offer the opportunity to establish cause and effect relationships, the data collection can be excessively expensive or/and time-consuming.

Stochastic Jetting and Dripping in Confined Soft Granular Flows

We report new dynamical modes in confined soft granular flows, such as stochastic jetting and dripping, with no counterpart in continuum viscous fluids. The new modes emerge as a result of the propagation of the chaotic behavior of individual grains - here, monodisperse emulsion droplets - to the level of the entire system as the emulsion is focused into a narrow orifice by an external viscous flow. We observe avalanching dynamics and the formation of remarkably stable jets - single-file granular chains - which occasionally break, resulting in a non-Gaussian distribution of cluster sizes.

Penalized wavelet estimation and robust denoising for irregular spaced data

Nonparametric univariate regression via wavelets is usually implemented under the assumptions of dyadic sample size, equally spaced fixed sample points, and i.i.d. normal errors. In this work, we propose, study and compare some wavelet based nonparametric estimation methods designed to recover a one-dimensional regression function for data that not necessary possess the above requirements. These methods use appropriate regularizations by penalizing the decomposition of the unknown regression function on a wavelet basis of functions evaluated on the sampling design.

Dynamics of polydisperse multiple emulsions in microfluidic channels

Multiple emulsions are a class of soft fluid in which small drops are immersed within a larger one and stabilized over long periods of time by a surfactant. We recently showed that, if a monodisperse multiple emulsion is subject to a pressure-driven flow, a wide variety of nonequilibrium steady states emerges at late times, whose dynamics relies on a complex interplay between hydrodynamic interactions and multibody collisions among internal drops.