The RapidCell (RC) model was originally developed to simulate flagellar bacterial chemotaxis in environments with spatiotemporally varying chemoattractant gradients. RC is best suited for motility simulations in unbounded nonfluid environments; this limits its use in biomedical applications hinging on bacteria-fluid dynamics in microchannels. In this study, we eliminated this constraint by coupling the RC model with the colloidal lattice Boltzmann (LB) model.

We investigate Poiseuille channel flow through intrinsically curved media, equipped with localized metric perturbations. To this end, we study the flux of a fluid driven through the curved channel in dependence of the spatial deformation, characterized by the parameters of the metric perturbations (amplitude, range, and density). We find that the flux depends only on a specific combination of parameters, which we identify as the average metric perturbation, and derive a universal flux law for the Poiseuille flow.

We present the formulation of a kinetic mapping scheme between the Direct Simulation Monte Carlo (DSMC) and the Lattice Boltzmann Method (LBM) which is at the basis of the hybrid model used to couple the two methods in view of efficiently and accurately simulate isothermal flows characterized by variable rarefaction effects. Owing to the kinetic nature of the LBM, the procedure we propose ensures to accurately couple DSMC and LBM at a larger Kn number than usually done in traditional hybrid DSMC--Navier-Stokes equation models.

The vortex-body interaction problem, that characterizes the flow field of a rudder placed downstream of a single-blade marine rotor, is investigated by numerical simulations.

A critical issue in image restoration is noise removal, whose state-of-art algorithm, NonLocal Means, is highly demanding in terms of computational time. Aim of the present paper is to boost its performance by an efficient algorithm tailored to GPU hardware architectures. This algorithm adapts itself to several variants of the methodologies in terms of different strategies for estimating the involved filtering parameter, type of noise affecting data, multicomponent signals, spatial dimension of the images. Numerical experiments on brain Magnetic Resonance images are provided.

We apply the Z-control approach to a generalized predator prey system and consider the specific case of indirect control of the prey population. We derive the associated Z-controlled model and investigate its properties from the point of view of the dynamical systems theory. The key role of the design parameter A. for the successful application of the method is stressed and related to specific dynamical properties of the Z-controlled model. Critical values of the design parameter are also found, delimiting the lambda-range for the effectiveness of the Z-method.

We study the conformational freedom of a protein made by two rigid domains connected by a flexible linker. The conformational freedom is represented as an unknown probability distribution on the space of allowed states. A new algorithm for the calculation of the maximum allowable probability is proposed, which can be extended to any type of measurements. In this paper we use pseudo contact shifts and residual dipolar coupling. We reconstruct a single central tendency in the distribution and discuss in depth the results.

Nature routinely presents us with spectacular demonstrations of organization and orchestrated motion in living species. Efficient information transfer among the individuals is known to be instrumental to the emergence of spatial patterns (e.g. V-shaped formations for birds or diamond-like shapes for fishes), responding to a specific functional goal such as predatory avoidance or energy savings. Such functional patterns materialize whenever individuals appoint one of them as a leader with the task of guiding the group towards a prescribed target destination.

We discuss the intriguing ability of minimal kinetic theory to describe a broad variety of complex non-equilibrium flows across scales of motion. It is argued that, besides major computational progress, minimal kinetic theory also provides a new conceptual framework to investigate the complexities of flowing matter far from equilibrium.