The RapidCell (RC) model was originally developed to simulate flagellar bacterial chemotaxis in environments with spatiotemporally varying chemoattractant gradients. RC is best suited for motility simulations in unbounded nonfluid environments; this limits its use in biomedical applications hinging on bacteria-fluid dynamics in microchannels. In this study, we eliminated this constraint by coupling the RC model with the colloidal lattice Boltzmann (LB) model.

Nature routinely presents us with spectacular demonstrations of organization and orchestrated motion in living species. Efficient information transfer among the individuals is known to be instrumental to the emergence of spatial patterns (e.g. V-shaped formations for birds or diamond-like shapes for fishes), responding to a specific functional goal such as predatory avoidance or energy savings. Such functional patterns materialize whenever individuals appoint one of them as a leader with the task of guiding the group towards a prescribed target destination.

We present a Lattice Boltzmann method for the simulation of a wide range of Knudsen regimes. The method is assessed in terms of normalised discharge for flow across parallel plates and three-dimensional flows in porous media. Available analytical solutions are well reproduced, supporting the the method as an appealing candidate to bridge the gap between the hydrodynamic regime and free molecular motion.

In the current study, a direct-forcing immersed boundary-non-Newtonian lattice Boltzmann method (IB-NLBM) is developed to investigate the sedimentation and interaction of particles in shear-thinning and shear-thickening fluids. In the proposed IB-NLBM, the non-linear mechanics of non-Newtonian particulate flows is detected by combination of the most desirable features of immersed boundary and lattice Boltzmann methods.

Planktonic copepods are small crustaceans that have the ability to swim by quick powerful jumps. Such an aptness is used to escape from high shear regions, which may be caused either by flow perturbations, produced by a large predator (i.e., fish larvae), or by the inherent highly turbulent dynamics of the ocean. Through a combined experimental and numerical study, we investigate the impact of jumping behavior on the small-scale patchiness of copepods in a turbulent environment.

We apply the Z-control approach to a generalized predator prey system and consider the specific case of indirect control of the prey population. We derive the associated Z-controlled model and investigate its properties from the point of view of the dynamical systems theory. The key role of the design parameter A. for the successful application of the method is stressed and related to specific dynamical properties of the Z-controlled model. Critical values of the design parameter are also found, delimiting the lambda-range for the effectiveness of the Z-method.

We study the conformational freedom of a protein made by two rigid domains connected by a flexible linker. The conformational freedom is represented as an unknown probability distribution on the space of allowed states. A new algorithm for the calculation of the maximum allowable probability is proposed, which can be extended to any type of measurements. In this paper we use pseudo contact shifts and residual dipolar coupling. We reconstruct a single central tendency in the distribution and discuss in depth the results.

Marine propellers in behind-hull conditions develop, in addition to thrust and torque, in-plane loads that are strictly related to fatigue stress of the propulsive shaft bearings, hull-induced vibrations and the dynamic response of the ship while maneuvering or experiencing wave induced motions. An in-depth understanding of their nature as well as their quantification in typical design and off-design operative scenario is fundamental for improving ship design criteria.

A critical issue in image restoration is noise removal, whose state-of-art algorithm, NonLocal Means, is highly demanding in terms of computational time. Aim of the present paper is to boost its performance by an efficient algorithm tailored to GPU hardware architectures. This algorithm adapts itself to several variants of the methodologies in terms of different strategies for estimating the involved filtering parameter, type of noise affecting data, multicomponent signals, spatial dimension of the images. Numerical experiments on brain Magnetic Resonance images are provided.

We investigate the influence of shear on the gravitational settling of heavy inertial particles in homogeneous shear turbulence (HST). In addition to the well-known enhanced settling velocity, observed for heavy inertial particles in homogeneous isotropic turbulence (HIT), a horizontal drift velocity is also observed in the shearing direction due to the presence of a nonzero mean vorticity (introducing symmetry breaking due to the mean shear). This drift velocity is due to the combination of shear, gravity, and turbulence, and all three of these elements are needed for this effect to occur.