Hierarchical non-negative matrix factorization applied to three-dimensional 3T MRSI data for automatic tissue characterization of the prostate

In this study non-negative matrix factorization (NMF) was hierarchically applied to simulated and in vivo three-dimensional 3 T MRSI data of the prostate to extract patterns for tumour and benign tissue and to visualize their spatial distribution. Our studies show that the hierarchical scheme provides more reliable tissue patterns than those obtained by performing only one NMF level. We compared the performance of three different NMF implementations in terms of pattern detection accuracy and efficiency when embedded into the same kind of hierarchical scheme.

Overproduction of indole-3-acetic acid in free-living rhizobia induces transcriptional changes resembling those occurring in nodule bacteroids.

Free-living bacteria grown under aerobic conditions were used to investigate, by next-generation RNA sequencing analysis, the transcriptional profiles of Sinorhizobium meliloti wild-type 1021 and its derivative, RD64, overproducing the main auxin indole-3-acetic acid (IAA). Among the upregulated genes in RD64 cells, we detected the main nitrogen-fixation regulator fixJ, the two intermediate regulators fixK and nifA, and several other genes known to be FixJ targets.

On the numerical solution of a nonlocal boundary value problem

We study a nonlinear boundary value problem involving a nonlocal (integral) operator in the coefficients of the unknown function. Provided sufficient conditions for the existence and uniqueness of the solution, for its approximation, we propose a numerical method consisting of a classical discretization of the problem and an algorithm to solve the resulting nonlocal and nonlinear algebraic system by means of some iterative procedures. The second order of convergence is assured by different sufficient conditions, which can be alternatively used in dependence on the given data.

The emerging role of ECM crosslinking in T cell mobility as a hallmark of immunosenescence in humans

Immunosenescence is thought to result from cellular aging and to reflect exposure to environmental stressors and antigens, including cytomegalovirus (CMV). However, not all of the features of immunosenescence are consistent with this view, and this has led to the emergence of the sister theory of "inflammaging". The recently discovered diffuse tissue distribution of resident memory T cells (TRM) which don't recirculate, calls these theories into question. These cells account for most T cells residing in barrier epithelia which sit in and travel through the extracellular matrix (ECM).

Optimal ship hull via optimal parameterisation

Numerical optimisation of a ship hull requires, like every shape design optimisation problem, the definition of a parametric expression of the object to be deformed. In this phase, some decisions are taken regarding the shape variability and the portion of the hull to be modified: the parameterisation of the hull is problem-dependent, with implications from the performances to be optimised (objective functions), and the right choice is not easy.

Assessment of two techniques to merge ground-based and TRMM rainfall measurements: a case study about Brazilian Amazon Rainforest

The availability of accurate rainfall data with high spatial resolution, especially in vast watersheds with low density of ground-measurements, is critical for planning and management of water resources and can increase the quality of the hydrological modeling predictions. In this study, we used two classical methods: the optimal interpolation and the successive correction method (SCM), for merging ground-measurements and satellite rainfall estimates. Cressman and Barnes schemes have been used in the SCM in order to define the error covariance matrices.

Generalized de la Vallée Poussin approximations on [-1, 1]

In this paper, a general approach to de la Vallée Poussin means is given and the resulting near best polynomial approximation is stated by developing simple sufficient conditions to guarantee that the Lebesgue constants are uniformly bounded. Not only the continuous case but also the discrete approximation is investigated and a pointwise estimate of the generalized de Vallée Poussin kernel has been stated to this purpose. The theory is illustrated by several numerical experiments.

Scenes from the life of Beppo Levi

On the occasion of the 140th anniversary of the birth of the famous Italian mathematician Beppo Levi (1875-1961), we publish an interview with his daughter Emilia. We also recall his brother Eugenio Elia Levi, a well-known and brilliant mathematician whose life was cut short at the front during World War I. A brief outline of Beppo Levi's life is followed by an introduction to a letter that he wrote to the periodical Israel in 1919, in part regarding the foundation of the state of Israel. Finally, we publish an English translation of the letter in its entirety.