Background. With the exponential increase in data dimension and methodological complexities, brain networks analysis with MEG and EEG has become an increasingly challenging and time-consuming endeavor. To date, performing all the data processing steps that are required for a complete MEG/EEG analysis pipeline often require the use of a multitude of software packages and in-house or custom tools (e.g. MRI segmentation, pre-processing, source reconstruction, graph theoretical analysis, statistics).

The highly conserved zinc finger CCCTC-binding factor (CTCF) regulates genomic imprinting and gene expression by acting as a transcriptional activator or repressor of promoters and insulator of enhancers. The multiple functions of CTCF are accomplished by co-association with other protein partners and are dependent on genomic context and tissue specificity. Despite the critical role of CTCF in the organization of genome structure, to date, only a subset of CTCF interaction partners have been identified.

Network flows and specifically water flow in open canals can be modeled by systems of balance laws defined on graphs. The shallow water or Saint-Venant system of balance laws is one of the most used model and present two phases: fluvial or sub-critical and torrential or super-critical. Phase transitions may occur within the same canal but transitions related to networks are less investigated. In this paper we provide a complete characterization of possible phase transitions for a case study of a simple scenario with two canals and one junction.

In order to understand the flow profiles of complex fluids, a crucial issue concerns the emergence of spatial correlations among plastic rearrangements exhibiting cooperativity flow behaviour at the macroscopic level. In this paper, the rate of plastic events in a Poiseuille flow is experimentally measured on a confined foam in a Hele-Shaw geometry. The correlation with independently measured velocity profiles is quantified by looking at the relationship between the localisation length of the velocity profiles and the localisation length of the spatial distribution of plastic events.

A special feature of Rayleigh-Taylor systems with chemical reactions is the competition between turbulent mixing and the "burning processes", which leads to a highly non-trivial dynamics. We studied the problem performing high resolution numerical simulations of a 2d system, using a thermal lattice Boltzmann (LB) model.

We present the results of our numerical simulations of the Rayleigh-Taylor turbulence, performed using a recently proposed (Sbragaglia et al 2009 J. Fluid Mech. 628 299, Scagliarini et al 2010 Phys. Fluids 22 055101) lattice Boltzmann method that can describe consistently a thermal compressible flow subjected to an external forcing. The method allowed us to study the system in both the nearly Boussinesq regime and the strongly compressible regime. Moreover, we show that when the stratification is important, the presence of the adiabatic gradient causes the arrest of the mixing process.