High-resolution analysis of the human retina miRNome reveals isomiR variations and novel microRNAs

MicroRNAs play a fundamental role in retinal development and function. To characterise the miRNome of the human retina, we carried out deep sequencing analysis on sixteen individuals. We established the catalogue of retina-expressed miRNAs, determined their relative abundance and found that a small number of miRNAs accounts for almost 90% of the retina miRNome. We discovered more than 3000 miRNA variants (isomiRs), encompassing a wide range of sequence variations, which include seed modifications that are predicted to have an impact on miRNA action.

Diffusive limit of a two-dimensional well-balanced approximation to a kinetic model of chemotaxis

A (2+2)-dimensional kinetic equation, directly inspired by the run-and-tumble modeling of chemotaxis dynamics is studied so as to derive a both ''2D well-balanced'' and ''asymptotic-preserving'' numerical approximation. To this end, exact stationary regimes are expressed by means of Laplace transforms of Fourier-Bessel solutions of associated elliptic equations. This yields a scattering S-matrix which permits to formulate a timemarching scheme in the form of a convex combination in kinetic scaling.

Diffusive Limit of a Two-Dimensional Well-Balanced Scheme for the Free Klein-Kramers Equation

The Fokker--Planck approximation for an elementary linear, two-dimensional kinetic model endowed with a mass-preserving integral collision process is numerically studied, along with its diffusive limit. In order to set up a well-balanced discretization relying on an $S$-matrix, exact steady states of the continuous equation are derived. The ability of the scheme to keep these stationary solutions invariant produces the discretization of the local differential operator which mimics the collision process.

Potential predictors of type-2 diabetes risk: machine learning, synthetic data and wearable health devices

Investigation about the mechanisms involved in the onset of type 2 diabetes in absence of familiarity is the focus of a research project which has led to the development of a computational model that recapitulates the aetiology of the disease. The model simulates the metabolic and immunological alterations related to type-2 diabetes associated to several clinical, physiological and behavioural characteristics of representative virtual patients.

A HYPERBOLIC SYSTEM OF CHEMOTAXIS ON NETWORK MODELING PHYSARUM DYNAMICS

Many studies have shown that Physarum polycephalum slime mold is able to find the shortest path in a maze. Here we study this behavior in a network, using a hyperbolic model of chemotaxis [1]. Suitable transmission and boundary conditions at each node are considered to mimic the behavior of such an organism in the feeding process. Several numerical tests are presented for special network geometries to show the qualitative agreement between our model and the observed behavior of the mold.

Lattice Boltzmann simulations of stochastic thin film dewetting

We study numerically the effect of thermal fluctuations and of variable fluid-substrate interactions on the spontaneous dewetting of thin liquid films. To this aim, we use a recently developed lattice Boltzmann method for thin liquid film flows, equipped with a properly devised stochastic term. While it is known that thermal fluctuations yield shorter rupture times, we show that this is a general feature of hydrophilic substrates, irrespective of the contact angle $\theta$. The ratio between deterministic and stochastic rupture times, though, decreases with $\theta$.

Game of neutrophils: modeling the balance between apoptosis and necrosis

Background: Neutrophils are one of the key players in the human innate immune system (HIIS). In the event of an insult where the body is exposed to inflammation triggering moieties (ITMs), neutrophils are mobilized towards the site of insult and antagonize the inflammation. If the inflammation is cleared, neutrophils go into a programmed death called apoptosis.