Quantized biopolymer translocation through nanopores: departure from simple scaling

Abstract
We discuss multiscale simulations of long biopolymer translocation through wide nanopores that can ac- commodate multiple polymer strands. The simulations provide clear evidence of folding quantization, namely the translocation proceeds through multifolded configurations characterized by a well-defined integer number of folds. As a consequence, the translocation time acquires a dependence on the average folding number, which results in a deviation from the single-exponent power law characterizing single-file translocation through narrow pores. The mechanism of folding quantization allows polymers above a threshold length (approximately 1000 persistence lengths for double-stranded DNA) to exhibit cooperative behavior, and as a result to translocate noticeably faster.
Anno
2009
Tipo pubblicazione
Altri Autori
Melchionna, S.; Bernaschi, M.; Fyta, M.; Kaxiras, E.; Succi, S.
Editore
Published by the American Physical Society through the American Institute of Physics,
Rivista
Physical review. E, Statistical, nonlinear, and soft matter physics (Print)